If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ), 'gf_id' => 'HOM05D000705', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000705' ), 'data_identifier' => 'HOM05D000705', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000705', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05330' => 'bna', 'A02p35060' => 'bna', 'A04p16240' => 'bna', 'A06p39260' => 'bna', 'A06p48620' => 'bna', 'A07p06850' => 'bna', 'A09p06970' => 'bna', 'A09p38410' => 'bna', 'A10p04370' => 'bna', 'A10p20420' => 'bna', 'Aa31LG11G10440' => 'aar', 'Aa31LG1G19030' => 'aar', 'Aa31LG5G1340' => 'aar', 'Aa31LG6G16040' => 'aar', 'Aa31LG7G14890' => 'aar', 'Aa31sc1463G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.148' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.122' => 'aag', 'Actinidia04548' => 'ach', 'Actinidia12341' => 'ach', 'Actinidia15350' => 'ach', 'Actinidia15351' => 'ach', 'Actinidia17807' => 'ach', 'Actinidia18387' => 'ach', 'Actinidia20612' => 'ach', 'Actinidia22526' => 'ach', 'Actinidia25421' => 'ach', 'Actinidia25422' => 'ach', 'Actinidia36985' => 'ach', 'Ah.01g003440' => 'amhyb', 'Ah.01g019230' => 'amhyb', 'Ah.05g176990' => 'amhyb', 'Ah.07g203480' => 'amhyb', 'Ah.07g203490' => 'amhyb', 'Ah.13g073140' => 'amhyb', 'AL1G15510' => 'aly', 'AL1G41200' => 'aly', 'AL3G41820' => 'aly', 'AL4G10790' => 'aly', 'AL4G19500' => 'aly', 'AL6G30670' => 'aly', 'AL7G11180' => 'aly', 'AL8G21020' => 'aly', 'Aqoxy2G03307' => 'aox', 'Aqoxy4G02328' => 'aox', 'Aqoxy5G02876' => 'aox', 'Aqoxy6G01160' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02ARWT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.202SR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2K9IC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.654PF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.765Y00' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X2EGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A38D4A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKCA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNMV54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EC4LZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QQQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7EX9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VR7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IMCH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG5Z1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6ZHES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LV7AN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9GM35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME4G16' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCXU7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RTK9WQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1N6XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUUC7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Z5L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC9ZU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UHL2QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V374FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WCV94E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZQ0SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y7NYXA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKD9YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP8DRN' => 'arhy', 'AT1G05610' => 'ath', 'AT1G27680' => 'ath', 'AT2G21590' => 'ath', 'AT4G39210' => 'ath', 'AT5G19220' => 'ath', 'AT5G48300' => 'ath', 'ATR0568G028' => 'atr', 'ATR0626G222' => 'atr', 'ATR0626G255' => 'atr', 'ATR0693G209' => 'atr', 'ATR0743G109' => 'atr', 'ATR0751G029' => 'atr', 'Atru.chr13.433' => 'acertr', 'Atru.chr13.434' => 'acertr', 'Atru.chr3.1967' => 'acertr', 'Atru.chr4.2529' => 'acertr', 'Atru.chr5.3049' => 'acertr', 'Atru.chr5.3396' => 'acertr', 'Atru.chr5.825' => 'acertr', 'Atru.chr6.3447' => 'acertr', 'AUR62002493' => 'cqu', 'AUR62011298' => 'cqu', 'AUR62014498' => 'cqu', 'AUR62016760' => 'cqu', 'AUR62023692' => 'cqu', 'AUR62025100' => 'cqu', 'AUR62034675' => 'cqu', 'AUR62037153' => 'cqu', 'AUR62038040' => 'cqu', 'AUR62038088' => 'cqu', 'BcaB02g06836' => 'bca', 'BcaB04g19569' => 'bca', 'BcaB05g23379' => 'bca', 'BcaB06g26410' => 'bca', 'BcaB06g26412' => 'bca', 'BcaB06g26766' => 'bca', 'BcaB06g27771' => 'bca', 'BcaB07g33280' => 'bca', 'BcaB08g36591' => 'bca', 'BcaC02g08782' => 'bca', 'BcaC03g13652' => 'bca', 'BcaC03g13655' => 'bca', 'BcaC04g18587' => 'bca', 'BcaC04g21046' => 'bca', 'BcaC05g24359' => 'bca', 'BcaC05g26584' => 'bca', 'BcaC05g26587' => 'bca', 'BcaC05g26589' => 'bca', 'BcaC05g26595' => 'bca', 'BcaC05g26770' => 'bca', 'BcaC06g30811' => 'bca', 'BcaC06g35827' => 'bca', 'BcaNung02349' => 'bca', 'BcaNung03884' => 'bca', 'BcaNung07121' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02700' => 'bna', 'BolC2t06946H' => 'bol', 'BolC2t08516H' => 'bol', 'BolC3t19696H' => 'bol', 'BolC4t26668H' => 'bol', 'BolC5t29175H' => 'bol', 'BolC5t31349H' => 'bol', 'BolC5t31352H' => 'bol', 'BolC5t31359H' => 'bol', 'BolC7t41513H' => 'bol', 'BolC7t44426H' => 'bol', 'BolC7t46741H' => 'bol', 'BolC9t58570H' => 'bol', 'BraA02t05491Z' => 'bra', 'BraA04t17263Z' => 'bra', 'BraA06t26840Z' => 'bra', 'BraA07t28477Z' => 'bra', 'BraA09t36345Z' => 'bra', 'BraA09t39350Z' => 'bra', 'BraA10t42704Z' => 'bra', 'BraA10t44112Z' => 'bra', 'C03p10930' => 'bna', 'C03p74440' => 'bna', 'C04p50740' => 'bna', 'C05p03970' => 'bna', 'C05p26370' => 'bna', 'C07p10430' => 'bna', 'C07p39080' => 'bna', 'C07p63300' => 'bna', 'C09p57030' => 'bna', 'CAN.G1058.8' => 'can', 'CAN.G164.10' => 'can', 'CAN.G52.11' => 'can', 'CAN.G585.15' => 'can', 'CAN.G607.12' => 'can', 'CAN.G69.16' => 'can', 'CANSAT01G1161' => 'cansat', 'CANSAT01G1418' => 'cansat', 'CANSAT25G2629' => 'cansat', 'CANSAT35G0320' => 'cansat', 'CANSAT56G0754' => 'cansat', 'CANSAT64G0784' => 'cansat', 'CANSAT78G2312' => 'cansat', 'CARHR005110' => 'chi', 'CARHR027170' => 'chi', 'CARHR102050' => 'chi', 'CARHR112540' => 'chi', 'CARHR183990' => 'chi', 'CARHR193740' => 'chi', 'CARHR247510' => 'chi', 'Carub.0001s0494' => 'cru', 'Carub.0001s2618' => 'cru', 'Carub.0004s0062' => 'cru', 'Carub.0006s1756' => 'cru', 'Carub.0007s0112' => 'cru', 'Carub.0008s0785' => 'cru', 'Ca_06444_v3' => 'car', 'Ca_09256_v3' => 'car', 'Ca_15359_v3' => 'car', 'Ca_15499_v3' => 'car', 'Ca_16323_v3' => 'car', 'Ca_20892_v3' => 'car', 'Ca_21099_v3' => 'car', 'CBR_g21791' => 'cbr', 'CBR_g37593' => 'cbr', 'Cc02_g17340' => 'ccan', 'Cc03_g03330' => 'ccan', 'Cc03_g16160' => 'ccan', 'Cc05_g09820' => 'ccan', 'Cc10_g02590' => 'ccan', 'CDE02G1504' => 'cde', 'CDE03G0193' => 'cde', 'CDE04G0430' => 'cde', 'CDE05G1568' => 'cde', 'CDE05G2051' => 'cde', 'CDE06G2393' => 'cde', 'CDE06G2395' => 'cde', 'CDE08G0070' => 'cde', 'CDE08G0935' => 'cde', 'CDE11G1176' => 'cde', 'Cfa002344' => 'cfa', 'Cfa004980' => 'cfa', 'Cfa013857' => 'cfa', 'Cfa014191' => 'cfa', 'Cfa015602' => 'cfa', 'Cfa023509' => 'cfa', 'Ciclev10000842m.g' => 'ccl', 'Ciclev10004731m.g' => 'ccl', 'Ciclev10014741m.g' => 'ccl', 'Ciclev10023395m.g' => 'ccl', 'Ciclev10023789m.g' => 'ccl', 'Ciclev10028195m.g' => 'ccl', 'CiPaw.01G162200' => 'cil', 'CiPaw.01G202800' => 'cil', 'CiPaw.04G198100' => 'cil', 'CiPaw.05G066700' => 'cil', 'CiPaw.06G134100' => 'cil', 'CiPaw.07G158900' => 'cil', 'CiPaw.08G059500' => 'cil', 'CiPaw.09G119000' => 'cil', 'ClCG02G003100' => 'cla', 'ClCG05G005320' => 'cla', 'ClCG05G018800' => 'cla', 'ClCG06G005900' => 'cla', 'ClCG11G004260' => 'cla', 'COL.COLO4_05827' => 'col', 'COL.COLO4_14409' => 'col', 'COL.COLO4_19678' => 'col', 'COL.COLO4_23089' => 'col', 'COL.COLO4_25961' => 'col', 'COL.COLO4_26273' => 'col', 'Cpa.g.sc1000.1' => 'cpa', 'Cpa.g.sc136.75' => 'cpa', 'Cpa.g.sc147.24' => 'cpa', 'Cpa.g.sc57.53' => 'cpa', 'Cpa.g.sc62.172' => 'cpa', 'Cpa.g.sc9.244' => 'cpa', 'Cre03.g188250' => 'cre', 'Cre07.g331300' => 'cre', 'Cre13.g567950' => 'cre', 'Cre16.g683450' => 'cre', 'CsaV3_2G014910' => 'csa', 'CsaV3_3G013570' => 'csa', 'CsaV3_3G045370' => 'csa', 'CsaV3_6G015080' => 'csa', 'CsaV3_7G002310' => 'csa', 'CSS0000089' => 'camsi', 'CSS0011759' => 'camsi', 'CSS0012276' => 'camsi', 'CSS0026130' => 'camsi', 'CSS0026865' => 'camsi', 'CSS0027173' => 'camsi', 'CSS0032913' => 'camsi', 'CSS0035261' => 'camsi', 'CSS0035419' => 'camsi', 'CSS0035735' => 'camsi', 'CSS0036650' => 'camsi', 'CSS0040888' => 'camsi', 'CSS0046880' => 'camsi', 'CSS0050226' => 'camsi', 'DCAR_009968' => 'dca', 'DCAR_013816' => 'dca', 'DCAR_021075' => 'dca', 'DCAR_022985' => 'dca', 'DCAR_028975' => 'dca', 'DCAR_030612' => 'dca', 'Dinv05341' => 'din', 'Dinv20833' => 'din', 'Dinv21331' => 'din', 'Dinv23501' => 'din', 'Dinv24742' => 'din', 'Dinv36111' => 'din', 'Dinv38411' => 'din', 'Dinv39442' => 'din', 'Dinv42051' => 'din', 'Dinv44498' => 'din', 'Duzib041G0576' => 'dzi', 'Duzib093G0077' => 'dzi', 'Duzib116G0096' => 'dzi', 'Duzib116G0803' => 'dzi', 'Duzib132G0040' => 'dzi', 'Duzib133G0043' => 'dzi', 'Duzib133G0818' => 'dzi', 'Duzib138G0676' => 'dzi', 'Duzib151G1050' => 'dzi', 'Duzib170G1150' => 'dzi', 'Duzib248G0452' => 'dzi', 'Duzib264G0085' => 'dzi', 'ECA236G3570' => 'eca', 'ECA238G4232' => 'eca', 'ECA240G1623' => 'eca', 'ECA240G3280' => 'eca', 'ECA246G0173' => 'eca', 'ECA246G3954' => 'eca', 'EL10Ac1g00644' => 'bvu', 'EL10Ac3g06179' => 'bvu', 'EL10Ac4g08580' => 'bvu', 'EL10Ac9g21704' => 'bvu', 'EL10Ac9g22352' => 'bvu', 'EL10As3g23349' => 'bvu', 'Eucgr.A00322' => 'egr', 'Eucgr.A00411' => 'egr', 'Eucgr.B01108' => 'egr', 'Eucgr.B03259' => 'egr', 'Eucgr.C03089' => 'egr', 'Eucgr.E03793' => 'egr', 'Eucgr.F01590' => 'egr', 'Eucgr.I01281' => 'egr', 'Eucgr.K00547' => 'egr', 'Eucgr.K01372' => 'egr', 'Eucgr.L00275' => 'egr', 'Eucgr.L00600' => 'egr', 'Eucgr.L02767' => 'egr', 'FAN02G2020' => 'fan', 'FAN05G0312' => 'fan', 'FAN07G1799' => 'fan', 'FAN09G3843' => 'fan', 'FAN12G0593' => 'fan', 'FAN14G1524' => 'fan', 'FAN15G0239' => 'fan', 'FAN15G0599' => 'fan', 'FAN17G0448' => 'fan', 'FAN20G0382' => 'fan', 'FAN20G2220' => 'fan', 'FAN22G0238' => 'fan', 'FAN23G0678' => 'fan', 'FAN23G1619' => 'fan', 'FAN24G0938' => 'fan', 'FAN26G2986' => 'fan', 'FAN27G0760' => 'fan', 'FAN27G1957' => 'fan', 'FvH4_2g09250' => 'fve', 'FvH4_2g39500' => 'fve', 'FvH4_4g14880' => 'fve', 'FvH4_6g40220' => 'fve', 'Glyma.02G304500' => 'gma', 'Glyma.03G226100' => 'gma', 'Glyma.04G011900' => 'gma', 'Glyma.04G030300' => 'gma', 'Glyma.06G011700' => 'gma', 'Glyma.06G030400' => 'gma', 'Glyma.07G258500' => 'gma', 'Glyma.11G116600' => 'gma', 'Glyma.12G042400' => 'gma', 'Glyma.14G009300' => 'gma', 'Glyma.14G072500' => 'gma', 'Glyma.17G015600' => 'gma', 'Glyma.17G252500' => 'gma', 'Glyma.19G223100' => 'gma', 'Gohir.A01G231100' => 'ghi', 'Gohir.A03G195800' => 'ghi', 'Gohir.A05G192300' => 'ghi', 'Gohir.A06G008500' => 'ghi', 'Gohir.A07G132800' => 'ghi', 'Gohir.A07G162500' => 'ghi', 'Gohir.A07G194100' => 'ghi', 'Gohir.A09G213700' => 'ghi', 'Gohir.A11G146800' => 'ghi', 'Gohir.A13G033500' => 'ghi', 'Gohir.D01G221200' => 'ghi', 'Gohir.D02G216900' => 'ghi', 'Gohir.D05G195500' => 'ghi', 'Gohir.D06G004100' => 'ghi', 'Gohir.D07G137100' => 'ghi', 'Gohir.D07G169100' => 'ghi', 'Gohir.D07G200200' => 'ghi', 'Gohir.D09G216200' => 'ghi', 'Gohir.D11G153500' => 'ghi', 'Gohir.D13G031400' => 'ghi', 'Gorai.001G149300' => 'gra', 'Gorai.001G224500' => 'gra', 'Gorai.002G267800' => 'gra', 'Gorai.005G244900' => 'gra', 'Gorai.006G236600' => 'gra', 'Gorai.007G163700' => 'gra', 'Gorai.009G200400' => 'gra', 'Gorai.010G008700' => 'gra', 'Gorai.012G140800' => 'gra', 'Gorai.013G035800' => 'gra', 'Gorai.N000500' => 'gra', 'GSVIVG01009747001' => 'vvi', 'GSVIVG01017911001' => 'vvi', 'GSVIVG01023805001' => 'vvi', 'GSVIVG01028270001' => 'vvi', 'GSVIVG01030141001' => 'vvi', 'GSVIVG01038262001' => 'vvi', 'HanXRQChr03g0071611' => 'han', 'HanXRQChr03g0074211' => 'han', 'HanXRQChr04g0097111' => 'han', 'HanXRQChr05g0151791' => 'han', 'HanXRQChr06g0171161' => 'han', 'HanXRQChr06g0176311' => 'han', 'HanXRQChr11g0329781' => 'han', 'HanXRQChr12g0382391' => 'han', 'HanXRQChr16g0515251' => 'han', 'HanXRQChr16g0526931' => 'han', 'Haze_00943' => 'cav', 'Haze_02408' => 'cav', 'Haze_11112' => 'cav', 'Haze_12570' => 'cav', 'Haze_22532' => 'cav', 'Hma1.2p1_0066F.1_g036240' => 'hma', 'Hma1.2p1_0469F.1_g159010' => 'hma', 'Hma1.2p1_0559F.1_g178660' => 'hma', 'Hma1.2p1_0872F.1_g231190' => 'hma', 'Hma1.2p1_0995F.1_g245740' => 'hma', 'HPP92_000127' => 'vpl', 'HPP92_000283' => 'vpl', 'HPP92_020282' => 'vpl', 'Hund00249' => 'sun', 'Hund06261' => 'sun', 'Hund08096' => 'sun', 'Hund13046' => 'sun', 'Hund17174' => 'sun', 'Lalb_Chr03g0025581' => 'lal', 'Lalb_Chr04g0247361' => 'lal', 'Lalb_Chr04g0247561' => 'lal', 'Lalb_Chr04g0247571' => 'lal', 'Lalb_Chr04g0247581' => 'lal', 'Lalb_Chr11g0062271' => 'lal', 'Lalb_Chr14g0369411' => 'lal', 'Lalb_Chr18g0046301' => 'lal', 'Lalb_Chr19g0138711' => 'lal', 'Lalb_Chr20g0118521' => 'lal', 'Lalb_Chr20g0118531' => 'lal', 'Lalb_Chr22g0354651' => 'lal', 'Lj1A802T39' => 'lonja', 'Lj1g0003506' => 'lja', 'Lj1g0005559' => 'lja', 'Lj1g0024384' => 'lja', 'Lj3C742G9' => 'lonja', 'Lj3g0024834' => 'lja', 'Lj4A36T68' => 'lonja', 'Lj4C788T17' => 'lonja', 'Lj4g0010957' => 'lja', 'Lj5C195T4' => 'lonja', 'Lj5g0009227' => 'lja', 'Lj6A283T16' => 'lonja', 'Lj6A595G51' => 'lonja', 'Lj8A139G61' => 'lonja', 'Lj9A375T86' => 'lonja', 'Lj9P35T19' => 'lonja', 'LjContig00081g0017715' => 'lja', 'Lju3176A0T16' => 'lonja', 'Lju3176C0T2' => 'lonja', 'Lsat_1_v5_gn_1_65520' => 'lsa', 'Lsat_1_v5_gn_3_70221' => 'lsa', 'Lsat_1_v5_gn_4_65361' => 'lsa', 'Lsat_1_v5_gn_5_27340' => 'lsa', 'Lsat_1_v5_gn_7_65521' => 'lsa', 'Lsat_1_v5_gn_7_98980' => 'lsa', 'Lsat_1_v5_gn_9_108380' => 'lsa', 'Manes.01G236700' => 'mes', 'Manes.03G182100' => 'mes', 'Manes.05G208000' => 'mes', 'Manes.11G085500' => 'mes', 'Manes.12G067900' => 'mes', 'Manes.13G058900' => 'mes', 'Manes.15G025400' => 'mes', 'Manes.18G019650' => 'mes', 'Mapoly0023s0119' => 'mpo', 'Mapoly0033s0108' => 'mpo', 'Mapoly0101s0020' => 'mpo', 'Mapoly0132s0055' => 'mpo', 'MBI10_g06728_MAGBIO' => 'mbi', 'MBI10_g35391_MAGBIO' => 'mbi', 'MBI10_g35392_MAGBIO' => 'mbi', 'MBI10_g43038_MAGBIO' => 'mbi', 'MBI12_g02097_MAGBIO' => 'mbi', 'MBI14_g37688_MAGBIO' => 'mbi', 'MBI15_g41440_MAGBIO' => 'mbi', 'MBI15_g44881_MAGBIO' => 'mbi', 'MBI16_g05562_MAGBIO' => 'mbi', 'MBI16_g14435_MAGBIO' => 'mbi', 'MBI17_g13562_MAGBIO' => 'mbi', 'MBI18_g03878_MAGBIO' => 'mbi', 'MBI18_g28935_MAGBIO' => 'mbi', 'MBI18_g33709_MAGBIO' => 'mbi', 'MBI18_g40810_MAGBIO' => 'mbi', 'MBI18_g45718_MAGBIO' => 'mbi', 'MCO01G575' => 'mco', 'MCO11G682' => 'mco', 'MCO15G288' => 'mco', 'MD02G1000500' => 'mdo', 'MD05G1014800' => 'mdo', 'MD05G1063400' => 'mdo', 'MD08G1027900' => 'mdo', 'MD09G1133900' => 'mdo', 'MD10G1072000' => 'mdo', 'MD13G1186100' => 'mdo', 'MD15G1023900' => 'mdo', 'MD15G1142300' => 'mdo', 'MD16G1186900' => 'mdo', 'MD17G1122400' => 'mdo', 'MD17G1122900' => 'mdo', 'Medtr1g057670' => 'mtr', 'Medtr3g056715' => 'mtr', 'Medtr3g082150' => 'mtr', 'Medtr3g112070' => 'mtr', 'Medtr3g116860' => 'mtr', 'Medtr4g070430' => 'mtr', 'Medtr4g131760' => 'mtr', 'Medtr5g097010' => 'mtr', 'Medtr7g111020' => 'mtr', 'MELO3C003812.2' => 'cme', 'MELO3C006552.2' => 'cme', 'MELO3C021412.2' => 'cme', 'MELO3C023310.2' => 'cme', 'MELO3C024175.2' => 'cme', 'Migut.B00222' => 'egut', 'Migut.G00309' => 'egut', 'Migut.J00613' => 'egut', 'Migut.M00521' => 'egut', 'Migut.M01475' => 'egut', 'Migut.N03018' => 'egut', 'MSTRG.10004' => 'ama', 'MSTRG.20072' => 'ama', 'MSTRG.24282' => 'ama', 'MSTRG.6733' => 'ama', 'MSTRG.7110' => 'ama', 'Nitab4.5_0000013g0010' => 'nta', 'Nitab4.5_0000017g0230' => 'nta', 'Nitab4.5_0000308g0330' => 'nta', 'Nitab4.5_0000630g0120' => 'nta', 'Nitab4.5_0000968g0050' => 'nta', 'Nitab4.5_0001022g0030' => 'nta', 'Nitab4.5_0003363g0010' => 'nta', 'Nitab4.5_0007468g0020' => 'nta', 'Nitab4.5_0009972g0030' => 'nta', 'Nitab4.5_0010298g0010' => 'nta', 'Nn1g02203' => 'nnu', 'Nn1g04923' => 'nnu', 'Nn1g07671' => 'nnu', 'Nn1g08320' => 'nnu', 'Nn1g09412' => 'nnu', 'Nn5g29669' => 'nnu', 'Nn6g32339' => 'nnu', 'Oeu016933.1' => 'oeu', 'Oeu017219.1' => 'oeu', 'Oeu017220.1' => 'oeu', 'Oeu017921.2' => 'oeu', 'Oeu019240.1' => 'oeu', 'Oeu030326.1' => 'oeu', 'Oeu056138.1' => 'oeu', 'Oeu056139.1' => 'oeu', 'Oeu059242.2' => 'oeu', 'Oeu061215.1' => 'oeu', 'Os01g0633100' => 'osa', 'Os03g0735000' => 'osa', 'Os05g0580000' => 'osa', 'Os07g0243200' => 'osa', 'Os08g0345800' => 'osa', 'Os09g0298200' => 'osa', 'Os11g0204600' => 'osa', 'Peaxi162Scf00016g00062' => 'pax', 'Peaxi162Scf00111g00412' => 'pax', 'Peaxi162Scf00303g00066' => 'pax', 'Peaxi162Scf01205g00151' => 'pax', 'Peaxi162Scf01336g00022' => 'pax', 'PGR042G1432' => 'pgr', 'PGR044G2172' => 'pgr', 'PGR083G1553' => 'pgr', 'PGR142G1285' => 'pgr', 'PGR142G3524' => 'pgr', 'PGR142G3526' => 'pgr', 'PGSC0003DMG400000735' => 'stu', 'PGSC0003DMG400009026' => 'stu', 'PGSC0003DMG400015952' => 'stu', 'PGSC0003DMG400025218' => 'stu', 'PGSC0003DMG400031084' => 'stu', 'PGSC0003DMG400046891' => 'stu', 'Phvul.001G012500' => 'pvu', 'Phvul.001G219900' => 'pvu', 'Phvul.003G076500' => 'pvu', 'Phvul.008G284000' => 'pvu', 'Phvul.009G023100' => 'pvu', 'Phvul.009G059800' => 'pvu', 'Phvul.011G044000' => 'pvu', 'Potri.002G033400' => 'ptr', 'Potri.004G157100' => 'ptr', 'Potri.005G229700' => 'ptr', 'Potri.007G146100' => 'ptr', 'Potri.008G195100' => 'ptr', 'Potri.009G118800' => 'ptr', 'Potri.014G110000' => 'ptr', 'Potri.014G171800' => 'ptr', 'Potri.017G001700' => 'ptr', 'Pp3c11_5720' => 'ppa', 'Pp3c11_8270' => 'ppa', 'Pp3c14_12850' => 'ppa', 'Pp3c17_13940' => 'ppa', 'Pp3c19_8410' => 'ppa', 'Pp3c1_3040' => 'ppa', 'Pp3c1_31540' => 'ppa', 'Pp3c2_35010' => 'ppa', 'Pp3c7_20320' => 'ppa', 'Pp3c7_20690' => 'ppa', 'Pp3c7_22280' => 'ppa', 'Pp3s127_20' => 'ppa', 'PRCOL_00002756' => 'pco', 'PRCOL_00002794' => 'pco', 'PRCOL_00004697' => 'pco', 'Prupe.1G153700' => 'ppe', 'Prupe.1G153800' => 'ppe', 'Prupe.1G376200' => 'ppe', 'Prupe.3G192600' => 'ppe', 'Prupe.7G270900' => 'ppe', 'Prupe.8G093400' => 'ppe', 'Prupe.8G093900' => 'ppe', 'Psat0ss4104g0040' => 'psa', 'Psat2g005160' => 'psa', 'Psat2g113440' => 'psa', 'Psat3g123840' => 'psa', 'Psat4g008080' => 'psa', 'Psat5g006360' => 'psa', 'Psat5g016480' => 'psa', 'Psat5g110720' => 'psa', 'Psat5g194600' => 'psa', 'Psat7g184120' => 'psa', 'Psat7g184160' => 'psa', 'PSO017G6511' => 'pso', 'PSO063G3600' => 'pso', 'PSO170G4066' => 'pso', 'PSO210G4119' => 'pso', 'PSO357G0179' => 'pso', 'PSO478G0912' => 'pso', 'PSO478G5127' => 'pso', 'PSO541G4188' => 'pso', 'PSO541G6278' => 'pso', 'PSO675G2677' => 'pso', 'PSO675G2843' => 'pso', 'PSO832G2630' => 'pso', 'QL02p009104' => 'qlo', 'QL04p065851' => 'qlo', 'QL04p065986' => 'qlo', 'QL06p003708' => 'qlo', 'QL10p064682' => 'qlo', 'QL10p065807' => 'qlo', 'QL11p044441' => 'qlo', 'RcHm_v2.0_Chr2g0084401' => 'rch', 'RcHm_v2.0_Chr2g0155241' => 'rch', 'RcHm_v2.0_Chr4g0417331' => 'rch', 'RcHm_v2.0_Chr6g0265271' => 'rch', 'RcHm_v2.0_Chr6g0301451' => 'rch', 'Rhsim01G0214200' => 'rsi', 'Rhsim02G0021200' => 'rsi', 'Rhsim02G0088100' => 'rsi', 'Rhsim05G0073200' => 'rsi', 'Rhsim06G0030200' => 'rsi', 'Rhsim06G0181600' => 'rsi', 'Rhsim06G0182500' => 'rsi', 'Rhsim09G0002300' => 'rsi', 'Sabra05G0177500' => 'sbr', 'Sabra07G0115200' => 'sbr', 'Sabra08G0148300' => 'sbr', 'Sabra14G0131000' => 'sbr', 'Sabra19G0121600' => 'sbr', 'Sabra19G0132600' => 'sbr', 'SalBow2G1389' => 'sbo', 'SalBow6G2020' => 'sbo', 'SalBow6G7266' => 'sbo', 'SalBow7G0459' => 'sbo', 'SalBow7G1479' => 'sbo', 'SalBow8G3644' => 'sbo', 'SalBow8G4724' => 'sbo', 'Sc02g0005840' => 'sci', 'Sc13g0007480' => 'sci', 'Sc15g0003830' => 'sci', 'Sc18g0004380' => 'sci', 'Sc20g0003050' => 'sci', 'Sed0003264' => 'sed', 'Sed0003930' => 'sed', 'Sed0007002' => 'sed', 'Sed0017964' => 'sed', 'Sed0020665' => 'sed', 'Sed0020909' => 'sed', 'Sed0023380' => 'sed', 'SEGI_04411' => 'sgi', 'SEGI_10673' => 'sgi', 'SEGI_10737' => 'sgi', 'SEGI_14532' => 'sgi', 'SEGI_19546' => 'sgi', 'SEGI_24562' => 'sgi', 'SEGI_30573' => 'sgi', 'SEGI_32277' => 'sgi', 'SGA_v2.0_scaffold186G40149' => 'sas', 'SGA_v2.0_scaffold19G08899' => 'sas', 'SGA_v2.0_scaffold201G41395' => 'sas', 'SGA_v2.0_scaffold237G43807' => 'sas', 'SGA_v2.0_scaffold58G20516' => 'sas', 'SGA_v2.0_scaffold70G23603' => 'sas', 'SGA_v2.0_scaffold73G24448' => 'sas', 'SMO021G0001' => 'smo', 'SMO119G0515' => 'smo', 'SMO145G0078' => 'smo', 'SMO197G0061' => 'smo', 'SMO239G0003' => 'smo', 'Solyc01g079790.4' => 'sly', 'Solyc01g109790.3' => 'sly', 'Solyc07g019440.3' => 'sly', 'Solyc07g056140.3' => 'sly', 'Solyc08g015670.4' => 'sly', 'Solyc12g011120.3' => 'sly', 'Sopen01g031550' => 'spe', 'Sopen01g051980' => 'spe', 'Sopen07g007750' => 'spe', 'Sopen07g029500' => 'spe', 'Sopen08g005780' => 'spe', 'Sopen12g006480' => 'spe', 'Sp1g04460' => 'spa', 'Sp1g23890' => 'spa', 'Sp2g18660' => 'spa', 'Sp3g23080' => 'spa', 'Sp4g00740' => 'spa', 'Sp4g07370' => 'spa', 'Sp6g25170' => 'spa', 'Sp7g36630' => 'spa', 'SpUn0479_0010' => 'spa', 'TAR362G0588' => 'tar', 'TAR362G0815' => 'tar', 'TAR365G0193' => 'tar', 'TAR626G0639' => 'tar', 'TAR628G0970' => 'tar', 'TAR628G1261' => 'tar', 'THA.LOC104800939' => 'tha', 'THA.LOC104807741' => 'tha', 'THA.LOC104808827' => 'tha', 'THA.LOC104814141' => 'tha', 'THA.LOC104822303' => 'tha', 'THA.LOC104825923' => 'tha', 'Thecc.01G201500' => 'tca', 'Thecc.01G328400' => 'tca', 'Thecc.02G082600' => 'tca', 'Thecc.04G225500' => 'tca', 'Thecc.05G000900' => 'tca', 'Thecc.08G030900' => 'tca', 'Thecc.10G143500' => 'tca', 'Thhalv10000141m.g' => 'esa', 'Thhalv10002570m.g' => 'esa', 'Thhalv10003993m.g' => 'esa', 'Thhalv10007379m.g' => 'esa', 'Thhalv10009542m.g' => 'esa', 'Thhalv10013265m.g' => 'esa', 'Thhalv10024927m.g' => 'esa', 'TPR.G12440' => 'tpr', 'TPR.G1271' => 'tpr', 'TPR.G1715' => 'tpr', 'TPR.G18605' => 'tpr', 'TPR.G22544' => 'tpr', 'TPR.G23129' => 'tpr', 'TPR.G36984' => 'tpr', 'TPR.G37065' => 'tpr', 'TPR.G38243' => 'tpr', 'TWI09G1637' => 'twi', 'TWI12G1074' => 'twi', 'TWI15G0744' => 'twi', 'TWI31G0538' => 'twi', 'TWI36G1361' => 'twi', 'TWI56G0979' => 'twi', 'TWI75G1377' => 'twi', 'TWI79G0492' => 'twi', 'unitig_0.g844' => 'ugi', 'unitig_21.g20242' => 'ugi', 'unitig_21.g20243' => 'ugi', 'unitig_21.g20244' => 'ugi', 'unitig_22.g5746' => 'ugi', 'unitig_744.g24509' => 'ugi', 'unitig_744.g24510' => 'ugi', 'unitig_749.g14064' => 'ugi', 'vmacro00727' => 'vma', 'vmacro12038' => 'vma', 'vmacro12390' => 'vma', 'vmacro15320' => 'vma', 'vmacro15717' => 'vma', 'vmacro17479' => 'vma', 'vmacro21666' => 'vma', 'vmacro22935' => 'vma', 'VMungo0251G0470' => 'vmu', 'VMungo0464G0929' => 'vmu', 'VMungo0647G0048' => 'vmu', 'VMungo0647G1055' => 'vmu', 'VMungo1127G0556' => 'vmu', 'VMungo1127G1607' => 'vmu', 'VMungo1127G2110' => 'vmu', 'VMungo1215G2699' => 'vmu', 'VMungo1309G0928' => 'vmu', 'VMungo1309G1601' => 'vmu', 'VMungo1383G1210' => 'vmu', 'Zm00001eb017580' => 'zma', 'Zm00001eb042990' => 'zma', 'Zm00001eb056340' => 'zma', 'Zm00001eb097730' => 'zma', 'Zm00001eb159060' => 'zma', 'Zm00001eb176800' => 'zma', 'Zm00001eb296990' => 'zma', 'Zm00001eb304130' => 'zma', 'Zm00001eb348430' => 'zma', 'Zm00001eb405170' => 'zma', 'Zm00001eb425260' => 'zma' ) $gf_id = 'HOM05D000705' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000705' ) $data_identifier = 'HOM05D000705' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 32, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 13, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 16, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 12, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 12, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425260' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1